FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32017821
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAGCG947901229.60542505375366No Hit
ATGACCGC943486229.4675330966464No Hit
TCTCGTTT768469024.001289781712504No Hit
CAAGTAAA486722615.20161537538735No Hit
TAAGTAAA1367440.4270871524954806No Hit
TCTCGTTA1013780.31662991682038577No Hit
CAAATAAA389740.12172596005205975No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)