FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395287

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395287
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142970176
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAAGCCT3762621026.31752373306164No Hit
GAGGTTTA3494199824.44006084178004No Hit
ACTCAGAC3444019224.089074353521113No Hit
CGCTCAGG3434024424.019166067194323No Hit
GAGGTTAA3749950.2622889685748166No Hit
CGCTCAGA2650290.18537362645479294No Hit
ACTCAGAA1737120.12150226352102972No Hit
TTAAGCCA1676990.11729649126262529No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)