FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28792821
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACCGT809563228.11684204197984No Hit
GCACAATG731041525.38971433191628No Hit
CTTGGTAC710888024.68976554954445No Hit
AAGTTGCA594905420.66158783121668No Hit
TGCACCGA511530.17765886850753526No Hit
GCACAATA354420.12309318354043879No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)