FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111551885
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGTCTT3360315930.123344845315703No Hit
ATGCCAAA3187251928.57192328036411No Hit
CCTTATCG2262993720.2864675930846No Hit
TGCAGGGC2205300119.7692768705791No Hit
GAAGTCTA2820270.2528213664878904No Hit
CCTTATCA1876480.16821589343828658No Hit
ATGCAAAA1637400.14678371414342303No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)