FastQCFastQC Report
Fri 10 May 2024
EGAF00005395296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32506544
Total Bases260 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGGCTC1084942333.37611958995087No Hit
CGTCCTAG898513327.64099745577383No Hit
GAGTTAGT768889123.65336345813938No Hit
TTAAAGCA468494114.412301104663724No Hit
ACCGGCTA421090.12954007045473676No Hit
CGTCCTAA329600.101394968348527No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)