FastQCFastQC Report
Wed 1 May 2024
EGAF00005395300

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395300
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences178273151
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCCGA5083543728.515475670253903No Hit
TGATGGCT4590136925.74777454850731No Hit
GCCATTTG4034511022.63106349648804No Hit
ATTGAAAC3952404622.170498349468225No Hit
GCCATTTA2864630.16068768538230416No Hit
CAGCCCCA2729220.15309203795921014No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)