FastQCFastQC Report
Fri 3 May 2024
EGAF00005395306

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395306
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142434742
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCCGGC3756485626.37338016872316No Hit
TGAGGAAG3638434625.544572545369583No Hit
GACTTCCT3518127424.699924685509664No Hit
CCTAATTA3151959422.12914739579477No Hit
TGAGGACG3246540.22793174996588966No Hit
GCTAATTA2457370.17252602598879985No Hit
GACTTCCA1759070.12350006573536673No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)