FastQCFastQC Report
Wed 8 May 2024
EGAF00005395307

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395307
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4576161
Total Bases36.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGATTA125933927.519551868913705No Hit
TGGAGGCT121555426.562745497809193No Hit
GAATCCGC109229523.8692432368529No Hit
ATTCTAAG94207920.586666421920032No Hit
GAATCCGA83570.18262032301748127No Hit
ATTCTCAG66020.14426939961246993No Hit
CCCGATAA59890.13087389189322665No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)