FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences184686947
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGTGTT5143161627.847997292412874No Hit
AGCACTGG5043394627.30780210471507No Hit
CATTACAC4721037925.562379890334103No Hit
GTGCGACA3380568018.304314706117268No Hit
TCAGTGTA4660850.252364884238408No Hit
AGCACTGA3369900.1824655209661352No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)