FastQCFastQC Report
Thu 9 May 2024
EGAF00005395313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15111922
Total Bases120.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACAGCAT439542829.08583037948449No Hit
AGGCCGTG389651825.784397246094837No Hit
TTTGTACA343025522.69899884342971No Hit
CCATATGC317106720.983876174056483No Hit
CTTGTACA462890.3063078276873054No Hit
TTGGTACA380670.2519004531653882No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)