FastQCFastQC Report
Wed 1 May 2024
EGAF00005395318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences177108865
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAGCGCT4652472026.268995625938885No Hit
AAGCATAA4476259925.274058980616243No Hit
GGTTGATG4208704123.763373448302545No Hit
CCCATCGC4133702023.339893234593312No Hit
GTAGCGCT6478330.3657823678108941No Hit
GGTTGATA2392190.1350689023951455No Hit
TTAGCGCA1952050.11021752073223437No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)