FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1935543
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGGCTC56981929.43974894900294No Hit
GTCCTTCT47821124.70681354017968No Hit
AAGACGGA45319823.414514686576325No Hit
TCTTAAAG40151620.744359593147763No Hit
TCTTAAAA34200.17669460197990952No Hit
CAGACGGA29860.1542719536584824No Hit
AAGACGAA23770.12280791488486692No Hit
GTCCTTCA20000.10333017659643833No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)