FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395325

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395325
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences232979103
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATCAT6443263327.65597093057741No Hit
GCTGAGGG5968852325.619689590787033No Hit
AGGTCATA5806405724.922431347844963No Hit
TAACGTCC4841651820.781485281965395No Hit
GCTGAGGA3718300.1595980048047485No Hit
TAACGTCA3159780.1356250392980524No Hit
GCGGAGGG2907290.12478758663604264No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)