FastQCFastQC Report
Wed 1 May 2024
EGAF00005395332

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395332
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences244431323
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGATGA6890492428.18989119491858No Hit
TCCACACG5784275523.66421549009085No Hit
CTTCTGTT5770902223.60950359868567No Hit
GAATGCAC5744104923.499872395650375No Hit
CTTCTGTA4942330.20219708093630862No Hit
TCCACACA2865850.11724561176637742No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)