FastQCFastQC Report
Tue 14 May 2024
EGAF00005395338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446392781
Total Bases3.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGGAAT14241376031.903239940611854No Hit
ACACCGGG10673683623.910968219712316No Hit
CATAATCC9639266221.593687466016615No Hit
TTGTTCTA9517453421.320804916869836No Hit
ACACCGGA11398950.25535695210985054No Hit
CATAATCA9138410.2047167962601976No Hit
GGCGGACT7319650.1639733058317536No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)