FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10300396
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCCGTT289959028.150276940808876No Hit
GGAGGAGG255923424.845976795455243No Hit
TTGTTTCC242452123.538133873687965No Hit
CCTAACAA213054920.684146512425347No Hit
CCTAACCA846720.8220266482958519No Hit
CATAACAA313500.3043572305375444No Hit
GGAGGAGA288290.279882443354605No Hit
AACCCGTA185090.1796921205747818No Hit
CCTAAAAA180080.17482822990494734No Hit
TTGTTTCA153990.14949910663628854No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)