FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19754489
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGCTCC618190331.29366191147744No Hit
AGCATGGT504504625.538731981373957No Hit
GTTCACTG494679325.04136148497691No Hit
TCGTGAAA305108415.44501606698103No Hit
CCGTGAAA2558331.295062605770263No Hit
TCGTCAAA580630.29392306730890383No Hit
CAAGCTCA455490.23057544034674854No Hit
GTTCACTA217070.10988388512605919No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)