FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113625382
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCCGT3314706529.172236358246085No Hit
CCACAGAA2947659025.9419061843066No Hit
ATGATACG2625505623.106682272804154Illumina Single End PCR Primer 1 (100% over 8bp)
GACTGTTC2346356420.649931896378575No Hit
CCACACAA2744210.24151381950909523No Hit
GACTGTTA1546680.13612099451511633No Hit
CCACAAAA1380910.12153182464108239No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)