FastQCFastQC Report
Wed 1 May 2024
EGAF00005395356

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395356
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences190652913
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGTTCAC5127823326.89611828800119No Hit
TGCCCAGA5059552026.53802619842478No Hit
CAAGGTCT5017972626.319936690398222No Hit
GTTAAGTG3672759119.264112161769066No Hit
GTTAAGTA2797390.14672684282563256No Hit
CAAGGTCA2364770.1240353458433651No Hit
ACGTTCAA2061380.10812213501295938No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)