FastQCFastQC Report
Wed 8 May 2024
EGAF00005395359

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395359
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15440171
Total Bases123.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGAAC487880731.59814097913812No Hit
CAGGATGG387793425.11587468817541No Hit
ACACTGTT360416623.3427855170775No Hit
TTTACCCA287987618.651840060579637No Hit
TTTACCAA270440.1751535005668007No Hit
ACACTGTA217020.1405554381489687No Hit
GGCGGAAC172810.11192233557516948No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)