FastQCFastQC Report
Sun 5 May 2024
EGAF00005395362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences143267148
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTTT4077341528.459710107442078No Hit
CAGGAAGA3713930825.923115325782852No Hit
AGCTCGAG3341662123.324691994287484No Hit
TTTATCCC3004109920.968588695574507No Hit
GCACGTTA5075120.3542417135294687No Hit
TTTATCCA2546770.17776371174779024No Hit
CAGAAAGA1849350.12908402420351106No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)