FastQCFastQC Report
Wed 8 May 2024
EGAF00005395365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10042953
Total Bases80.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTGTC339152533.77019687336981No Hit
GAAACCCT333629733.22027893588669No Hit
AGCGAAAG302601630.13073943490525No Hit
CCGTGTGA1089901.085238574749877No Hit
AGCGACAG360670.3591274399073659No Hit
CCTTGTGA305540.30423322701998107No Hit
GAAACCCA176070.17531696105717115No Hit
TTTCTGTA102100.10166332551790294No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)