FastQCFastQC Report
Wed 8 May 2024
EGAF00005395371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11565563
Total Bases92.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC339204729.32885325167482No Hit
CTGACTGA291334925.189858894028767No Hit
ACCGTATG281839724.368869894185003No Hit
GATTAGAT214359118.53425553083754No Hit
GAGTAGAT875680.7571442912031174No Hit
CAGACTGA485880.4201092501938729No Hit
TGACGCCA398300.3443844454437713No Hit
GCTTAGAT252930.21869233689704512No Hit
ACCGTATA136580.11809195972560955No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)