FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142973858
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTACAT3804708226.611215876961225No Hit
CTAACGCA3474387324.30085715390012No Hit
AGCCTATG3453056124.151660648340343No Hit
TAGGGTGC3449451824.12645114465611No Hit
AGCCTATA2296420.16061817398814265No Hit
GCTTACAA1515520.10599979752941968No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)