FastQCFastQC Report
Wed 8 May 2024
EGAF00005395377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20727245
Total Bases165.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTTAGC541566226.128228811885034No Hit
GAGACTAT511052224.656060175869975No Hit
TCTCAGTG488835223.584185934985573No Hit
ATAGGCCA478822223.101101955421473No Hit
AGAGGCCA3489031.6833061991596086No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)