FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87490873
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTTGGGA2585936429.556641868232358No Hit
TACATTCT2408018127.523077750064285No Hit
CCAGAAAG2019048123.07724258277775No Hit
GTGCCCTC1574456117.995661101701433No Hit
AGTTGGAA4640360.5303821805504215No Hit
CCAGACAG3283490.3752951465005956No Hit
GTGCCCTA1592340.18200069851857575No Hit
TACATTCA1250650.14294633909985102No Hit
CCAGAAAA1164950.13315103165103861No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)