FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19898510
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATACCC549389027.609554685250302No Hit
ACCACGAA479876424.116197644949295No Hit
TGTCTATG479766424.110669592848915No Hit
GTGGGTGT451769922.703704950772696No Hit
CAATACCA558730.2807898681861104No Hit
GGGGGTGT407490.20478417730774817No Hit
ACCACAAA392250.19712531239776243No Hit
TGTCTATA244560.1229036746972512No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)