FastQCFastQC Report
Sun 5 May 2024
EGAF00005395386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences138346194
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAACTCT3877872228.03020515331271No Hit
CTTGGAGA3764498027.210708810681123No Hit
AAGTACTC3254471523.524112994391448No Hit
TCCCGGAG1406462910.166256543349505No Hit
TCCCTGAG136976809.901016864981482No Hit
GGACCTCT3529190.2550984525096513No Hit
AAGTACTA2003610.1448258128445514No Hit
GGAACTCA1681190.1215205096281868No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)