FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395395

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395395
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19217983
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTGGCT554203828.837771372781418No Hit
CGGGCTTA536680027.92592750238149No Hit
AAACAAAC409694021.318262171425587No Hit
TTCATCGG379094419.726024317952618No Hit
AAACAAAA907810.472375274762185No Hit
AAAAAAAC512080.2664587641689557No Hit
CGGGCTAA324330.16876380835595495No Hit
TTCATCGA280930.1461807932705529No Hit
CGGGCTCA211100.10984503420572284No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)