FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19597469
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCCAGC725789437.0348538375032No Hit
CGATAGCT465834623.77014092993335No Hit
GTCAGCTA387666919.781477904110986No Hit
AATGTTAG358229718.27938597581147No Hit
AATGGTAG276110.14089064256205738No Hit
TCGCCAGA217360.11091228158085108No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)