FastQCFastQC Report
Fri 10 May 2024
EGAF00005395404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences137353366
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCGTGT3935621628.65325921463039No Hit
GCCACGTA3922389228.55692084022171No Hit
TGATTAAC2997655021.824401449324508No Hit
CTTGACCG2741433519.958983021937737No Hit
GCCAAGTA2879690.20965558281258284No Hit
GCCACCTA2004890.14596584404054574No Hit
CTTGACCA1727320.12575738406003098No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)