FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005395413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55883617
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCCCT1843436532.98706488522388No Hit
GGATGGGC1296314323.196678554288997No Hit
CCGATTAA1270011722.726011095523756No Hit
AATCAATG1078862319.30552025650022No Hit
TTCGCCCA1009520.18064686113642214No Hit
CCGATAAA865230.1548271293892806No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)