FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences135064799
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGGGAC3737984627.67549078424201No Hit
GGGACACA3701624527.406285926505543No Hit
ACCTACTG3036792922.48397008313025No Hit
TTTCTTGT2890394021.400054058496767No Hit
CGGACACA2666290.1974082084851731No Hit
TGGACACA1762080.13046182373543533No Hit
ACCTACTA1569610.11621162668742431No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)