FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005395419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64024041
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGTCGC2380273737.177811066314916No Hit
GTGTCGCT1436996022.44463138463878No Hit
CCCAATAG1222067019.087626786943986No Hit
TATCGATA1220014219.055563831092762No Hit
GATCGATA1189860.18584581376236467No Hit
CCCACTAG1048510.1637681695224455No Hit
CCCAATAT843260.13170989941106653No Hit
ATAGTCGC689380.10767517782890336No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)