FastQCFastQC Report
Sat 11 May 2024
EGAF00005395422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences140053014
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGTAAT4543636632.442262185089426No Hit
AGTAAGCA3737803826.688492401884332No Hit
GTATCTTC3269190123.34251871223564No Hit
TACCGCGG2273092816.230231218015774No Hit
TCCCGCGG5886990.42034011492248213No Hit
TACCGCGA2140240.1528164185027821No Hit
GTATCTTA2134990.15244156045081614No Hit
CCGGTAAA1504090.10739433283456505No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)