FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005395425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73861388
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGATGTG2074289028.08353669172857No Hit
CACGGTGC1955750526.4786589171598No Hit
TTTCCACT1749618523.6878638132281No Hit
AGATACAA1469925719.901138332250135No Hit
CACGGTGA1101640.14914964771579978No Hit
GCGAGGTG1049140.1420417390477417No Hit
TTTCCACA883720.11964573425021474No Hit
GCGATGTA796800.10787774527064127No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)