FastQCFastQC Report
Fri 3 May 2024
EGAF00005395428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences179349730
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGAGCGC4913227927.39467686959997No Hit
CACGCACG4605452425.678613511154992No Hit
GTACTTAA4350826124.258894061340378No Hit
AGTTAGTT3895095321.71787657555994No Hit
GTACTAAA3868580.2157003526015902No Hit
CACGCACA2863110.1596383780449516No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)