FastQCFastQC Report
Wed 8 May 2024
EGAF00005395431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61623027
Total Bases492.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCATTCC1895899130.766081971273497No Hit
TTGCCGGA1730407228.08052905288148No Hit
CAAGAATT1330784521.595571733274316No Hit
AGTTGCAG1084256617.594990911433158No Hit
GCCATTCA1612020.2615937707831198No Hit
CAAGAATA815650.13236123567899383No Hit
TTGCCGAA667150.10826310106447708No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)