FastQCFastQC Report
Wed 1 May 2024
EGAF00005395434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences242488761
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGAAGT6622864827.3120484953115No Hit
CAATGGCA6187542325.516820963096098No Hit
AGTCTCAG6003824524.75918667422281No Hit
TTGACTTC5279079321.770408155122702No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)