FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005395437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37911466
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCCCGAC979081925.825482454305515No Hit
CAGTACTG967176225.511442896985308No Hit
AGTAGTCT933182024.61476957920857No Hit
GCAGTAGA840061422.158504764759034No Hit
AGTAGTCA486120.1282250599330556No Hit
CAGTACTA465990.12291532065787168No Hit
TTCCCGAA430030.11343006361188987No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)