FastQCFastQC Report
Sun 5 May 2024
EGAF00005395440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166847529
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTGCCA4432449126.5658660129153No Hit
TAGGCGGT4417242726.474726515128673No Hit
CTTCATAC3983853923.87721246983526No Hit
GGAATATG3665168321.96717159652991No Hit
GGACTATG3574050.2142105442868141No Hit
ACCTGCAA2760450.1654474607172636No Hit
GGAATATA2740450.1642487615144723No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)