FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005395443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31909032
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACGCCT1053060233.00194753635898No Hit
TGTGCGGG916160728.711641894997005No Hit
ACCATAAC718627722.52113758888079No Hit
GTGTATTA424195613.29390374487073No Hit
GGGTATTA1421940.4456230449109205No Hit
TGTGCGGA668400.20947047218480333No Hit
CAACGCCA586820.18390404321886042No Hit
GGTGCGGG449400.1408378668459764No Hit
ACCATAAA368020.1153341160584251No Hit
GTGGATTA350150.10973382081913359No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)