FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34221187
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC1005809029.391411817480208No Hit
TCAGCCGT952631927.837488512598934No Hit
GGTCAATA776795022.69924184687106No Hit
ATCTTTAG614747517.96394438334357No Hit
GGGCAATA792360.23154077034206907No Hit
CAGAGGCA427160.1248232564229873No Hit
ATCGTTAG385720.1127137992028155No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)