FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005395450

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395450
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50367186
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCCAC1532731830.43115809566967No Hit
GGCAATGG1226797724.357082406787626No Hit
TTTGGGTA1153485622.901529579198648No Hit
ACATTACT983401119.52463852159618No Hit
GTTGGGTA4657620.9247330196290895No Hit
CAGCCCAA832170.16522066569293747No Hit
GGCAATGA776260.15412018451854748No Hit
ACATTACA554570.11010541664964169No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)