FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395453

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395453
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27380615
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAAGGCC767292728.02320912075934No Hit
GATGCCAA737040726.918339854674556No Hit
CTCCTAGT606635322.155649170042384No Hit
AGGTATTG567923520.741809488209086No Hit
GTTGCCAA599420.2189213061868771No Hit
TCAAGGCA418230.1527467516708445No Hit
AGGTATTA407290.14875122417812747No Hit
GATGCAAA363190.1326449387641585No Hit
TGGTATTG362970.1325645899480344No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)