FastQCFastQC Report
Wed 8 May 2024
EGAF00005395456

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395456
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30994474
Total Bases247.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGATCACC872249328.142090748176596No Hit
ACGGACAT815002526.295090537751985No Hit
GATCTTGA674410321.759049693826068No Hit
TTCAGGTG673822821.740094702042693No Hit
CGATCACA693320.2236914877148746No Hit
GTTCTTGA527120.170069025852802No Hit
GTCAGGTG362520.11696278504355324No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)