FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005395459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48034169
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATCCG1267873426.395239605373416No Hit
CCTCATTC1226509825.53411093673755ABI Solid3 Adapter A (100% over 8bp)
TAATGGGA1167290824.301259380588014No Hit
GTGGCAAT1044891321.753083726711292No Hit
TAATGGAA1126550.2345309648221457No Hit
CCTCATTA969830.20190419032751458No Hit
GAATGGGA710980.1480154679057735No Hit
AGCATCCA648520.135012224318901No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)