FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005395465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72592376
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGGTC1959281226.990178693145406No Hit
CCTGAAGG1887720726.00439335392466No Hit
AAGATCAT1793333424.704156260156022No Hit
TGATCTCA1487440320.49031016700707No Hit
CCTGTAGG1017620.1401827651983729No Hit
CAGATCAT844460.1163290205572001Illumina PCR Primer Index 7 (100% over 8bp)
AATATCAT817760.11265094835854388No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)