FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005395468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59219424
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGGAT1635239327.613225349844672No Hit
AGGTACGC1535953125.93664369312339No Hit
GTTCCTCA1333494522.517856641091274ABI Solid3 Adapter A (100% over 8bp)
TAAGTATG1307934122.086234746221102No Hit
TAAGTATA724000.12225718372404297No Hit
GAAGTATG593860.10028128608613282No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)