FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005395474

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005395474
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109482348
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGCGG2922513926.693927864974178No Hit
TGCACAAA2823245525.787220968260566No Hit
GCAGTTCT2662803024.32175641684265No Hit
AAGCAGTC2331174121.292693686109107No Hit
AAGCAGTA1799520.1643662227631435No Hit
CTTTGCGA1717110.15683898193341633No Hit
GCAGTTCA1518570.13870455171458324No Hit
GCCGTTCT1116010.10193515396655542No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)